In this talk, I will present my research on the dynamical structure of young stellar objects in the early stages of star and planet formation, through the combination of physically motivated modeling and ALMA observations, using radiative transfer and synthetic observation simulations. The advent of ALMA has enabled us to directly observe protostellar disks in the earliest phases of star formation with sufficient resolution. These disks are also crucial as the initial conditions and environment for planet formation. However, even at millimeter and submillimeter wavelengths, protostellar disks are highly optically thick, making it challenging to probe their internal structures observationally. Theoretically, they are predicted to be in a complex physical state involving strong coupling between magnetic fields, turbulence, and dust dynamics, and there is still no consensus regarding their internal structure and evolution. To address this, we have constructed physically motivated models based on ALMA data, incorporating radiative transfer and synthetic observations. Our results support the presence of layered accretion at approximately two scale heights above the disk midplane, as proposed in non-ideal MHD simulations, rather than accretion driven by simple α-viscosity. Regarding dust evolution, the findings suggest that significant grain growth occurs in the radial direction, while vertical dust settling remains inefficient. These results place strong constraints on theoretical models of protostellar disks. In the latter half of the talk, I will introduce additional works that apply this same approach to the evolution of protostars themselves, with particular focus on binary and multiple systems, which represent the primary mode of star formation.